matlab-based image-processing module Search Results


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MathWorks Inc cellprofiler
Tools freely available - characteristics (X = available/yes; O = not available/no, last access: 30/07/2022).
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MathWorks Inc matlab/simu-link-based simulation environment
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MultiCam Inc automated tools measuring germination
Measured variables on sugar beet genotypes with the PHENOTIC platform equipments.
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Image Search Results


Tools freely available - characteristics (X = available/yes; O = not available/no, last access: 30/07/2022).

Journal: Computational and Structural Biotechnology Journal

Article Title: CometAnalyser : A user-friendly, open-source deep-learning microscopy tool for quantitative comet assay analysis

doi: 10.1016/j.csbj.2022.07.053

Figure Lengend Snippet: Tools freely available - characteristics (X = available/yes; O = not available/no, last access: 30/07/2022).

Article Snippet: CellProfiler , : CellProfiler is a popular MATLAB / Python software suite worldwide used to set several microscopy image-based analyses by aligning in a pipeline customised modules for standard image processing tasks.

Techniques: Fluorescence, Selection

Jaccard Index values (the better value for each row reported in Italics).

Journal: Computational and Structural Biotechnology Journal

Article Title: CometAnalyser : A user-friendly, open-source deep-learning microscopy tool for quantitative comet assay analysis

doi: 10.1016/j.csbj.2022.07.053

Figure Lengend Snippet: Jaccard Index values (the better value for each row reported in Italics).

Article Snippet: CellProfiler , : CellProfiler is a popular MATLAB / Python software suite worldwide used to set several microscopy image-based analyses by aligning in a pipeline customised modules for standard image processing tasks.

Techniques:

Segmentations. Ground truth (yellow outline), CometAnalyser ’s masks (green outline), CellProfiler ’s masks (red outline). (For interpretation of the references to colour in this figure legend, the reader is referred to the web version of this article.)

Journal: Computational and Structural Biotechnology Journal

Article Title: CometAnalyser : A user-friendly, open-source deep-learning microscopy tool for quantitative comet assay analysis

doi: 10.1016/j.csbj.2022.07.053

Figure Lengend Snippet: Segmentations. Ground truth (yellow outline), CometAnalyser ’s masks (green outline), CellProfiler ’s masks (red outline). (For interpretation of the references to colour in this figure legend, the reader is referred to the web version of this article.)

Article Snippet: CellProfiler , : CellProfiler is a popular MATLAB / Python software suite worldwide used to set several microscopy image-based analyses by aligning in a pipeline customised modules for standard image processing tasks.

Techniques:

Measured variables on sugar beet genotypes with the PHENOTIC platform equipments.

Journal: Data in Brief

Article Title: High throughput phenotyping dataset related to seed and seedling traits of sugar beet genotypes

doi: 10.1016/j.dib.2020.105201

Figure Lengend Snippet: Measured variables on sugar beet genotypes with the PHENOTIC platform equipments.

Article Snippet: How data were acquired , Data were acquired on the phenotyping platform PHENOTIC https://www6.inra.fr/phenotic/ ). The laboratory equipment on this platform includes: - a tomograph NSI X-50 (North Star Imaging, Minnesota, USA) - automated tools measuring germination (Multicam, ESEO, Angers, France) - automated equipment measuring heterotrophic seedling growth (Eloncam, ESEO, Angers, France) - 3D image processing: using Avizo image processing modules where the scripts were written in TCL scripting language (Ousterhout, TCL/TK) and MATLAB (The MathWorks, Inc., Natick, Massachusetts, United States). - 2D image processing of seed germination: using Fiji image processing package based on ImageJ, http://fiji.sc/ ..

Techniques:

Specifications Table

Journal: Data in Brief

Article Title: High throughput phenotyping dataset related to seed and seedling traits of sugar beet genotypes

doi: 10.1016/j.dib.2020.105201

Figure Lengend Snippet: Specifications Table

Article Snippet: How data were acquired , Data were acquired on the phenotyping platform PHENOTIC https://www6.inra.fr/phenotic/ ). The laboratory equipment on this platform includes: - a tomograph NSI X-50 (North Star Imaging, Minnesota, USA) - automated tools measuring germination (Multicam, ESEO, Angers, France) - automated equipment measuring heterotrophic seedling growth (Eloncam, ESEO, Angers, France) - 3D image processing: using Avizo image processing modules where the scripts were written in TCL scripting language (Ousterhout, TCL/TK) and MATLAB (The MathWorks, Inc., Natick, Massachusetts, United States). - 2D image processing of seed germination: using Fiji image processing package based on ImageJ, http://fiji.sc/ ..

Techniques: Imaging